Read an IsoX output file (.isox
) into a tibble data frame
Value
A tibble containing at minimum the columns filename
, scan.no
, time.min
, compound
, isotopocule
, ions.incremental
, tic
, it.ms
Details
Additional information on the columns:
filename
: name of the original Thermo.raw
file processed by IsoXscan.no
: scan numbertime.min
: acquisition or retention time in minutescompound
: name of the compound (e.g., NO3-)isotopocule
: name of the isotopocule (e.g., 15N); calledisotopolog
in.isox
ions.incremental
: estimated number of ions, in increments since it is a calculated numbertic
: total ion current (TIC) of the scanit.ms
: scan injection time (IT) in millisecond (ms)
Examples
fpath <- system.file("extdata", "testfile_dual_inlet.isox", package = "isoorbi")
df <- orbi_read_isox(file = fpath)
#> orbi_read_isox() is loading .isox data from file path:
#> testfile_dual_inlet.isox